STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0A54_11462PX domain-containing protein. (700 aa)    
Predicted Functional Partners:
B0A54_12903
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
    
   0.946
B0A54_10069
DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).
    
   0.946
B0A54_11442
Ribosomal_L18e/L15P domain-containing protein.
 
 
  
 0.740
B0A54_16022
Uncharacterized protein.
    
 0.736
B0A54_15663
Uncharacterized protein.
    
 0.736
B0A54_12683
AAA domain-containing protein.
 
      0.729
B0A54_15384
V-SNARE coiled-coil homology domain-containing protein.
    
 0.718
B0A54_01371
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.706
B0A54_00110
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
   
 
 0.706
B0A54_06882
Vacuolar protein sorting-associated protein 29; Belongs to the VPS29 family.
    
 
 0.643
Your Current Organism:
Friedmanniomyces endolithicus
NCBI taxonomy Id: 329885
Other names: CCFEE 5208, F. endolithicus
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