B0A54_11181 protein (Friedmanniomyces endolithicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A54_11181

AMP_N domain-containing protein. (528 aa)

Predicted Functional Partners:

B0A54_14020

0.761

B0A54_13125

0.761

B0A54_09496

0.547

B0A54_01699

0.547

B0A54_09641

0.523

B0A54_10433

0.523

B0A54_07688

0.523

B0A54_05286

0.523

B0A54_03603

0.523

B0A54_03742

0.523

Your Current Organism:

Friedmanniomyces endolithicus

NCBI taxonomy Id: 329885
Other names: CCFEE 5208, F. endolithicus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A54_01699	B0A54_11181	A0A4U0VIQ5	A0A4U0UQQ5	Cupin_2 domain-containing protein.	AMP_N domain-containing protein.	0.547
B0A54_03603	B0A54_11181	A0A4U0VAG1	A0A4U0UQQ5	Nitrite reductase [NAD(P)H].	AMP_N domain-containing protein.	0.523
B0A54_03742	B0A54_11181	A0A4U0VF14	A0A4U0UQQ5	Rieske domain-containing protein.	AMP_N domain-containing protein.	0.523
B0A54_05286	B0A54_11181	A0A4U0V4E9	A0A4U0UQQ5	Pyr_redox_2 domain-containing protein.	AMP_N domain-containing protein.	0.523
B0A54_07688	B0A54_11181	A0A4U0V0L6	A0A4U0UQQ5	Pyr_redox_2 domain-containing protein.	AMP_N domain-containing protein.	0.523
B0A54_09496	B0A54_11181	A0A4U0URD9	A0A4U0UQQ5	Cupin_2 domain-containing protein.	AMP_N domain-containing protein.	0.547
B0A54_09641	B0A54_11181	A0A4U0UST3	A0A4U0UQQ5	Rieske domain-containing protein.	AMP_N domain-containing protein.	0.523
B0A54_10433	B0A54_11181	A0A4U0UTU6	A0A4U0UQQ5	Pyr_redox_2 domain-containing protein.	AMP_N domain-containing protein.	0.523
B0A54_11181	B0A54_01699	A0A4U0UQQ5	A0A4U0VIQ5	AMP_N domain-containing protein.	Cupin_2 domain-containing protein.	0.547
B0A54_11181	B0A54_03603	A0A4U0UQQ5	A0A4U0VAG1	AMP_N domain-containing protein.	Nitrite reductase [NAD(P)H].	0.523
B0A54_11181	B0A54_03742	A0A4U0UQQ5	A0A4U0VF14	AMP_N domain-containing protein.	Rieske domain-containing protein.	0.523
B0A54_11181	B0A54_05286	A0A4U0UQQ5	A0A4U0V4E9	AMP_N domain-containing protein.	Pyr_redox_2 domain-containing protein.	0.523
B0A54_11181	B0A54_07688	A0A4U0UQQ5	A0A4U0V0L6	AMP_N domain-containing protein.	Pyr_redox_2 domain-containing protein.	0.523
B0A54_11181	B0A54_09496	A0A4U0UQQ5	A0A4U0URD9	AMP_N domain-containing protein.	Cupin_2 domain-containing protein.	0.547
B0A54_11181	B0A54_09641	A0A4U0UQQ5	A0A4U0UST3	AMP_N domain-containing protein.	Rieske domain-containing protein.	0.523
B0A54_11181	B0A54_10433	A0A4U0UQQ5	A0A4U0UTU6	AMP_N domain-containing protein.	Pyr_redox_2 domain-containing protein.	0.523
B0A54_11181	B0A54_13125	A0A4U0UQQ5	A0A4U0UIU5	AMP_N domain-containing protein.	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	0.761
B0A54_11181	B0A54_14020	A0A4U0UQQ5	A0A4U0UHD6	AMP_N domain-containing protein.	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	0.761
B0A54_13125	B0A54_11181	A0A4U0UIU5	A0A4U0UQQ5	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	AMP_N domain-containing protein.	0.761
B0A54_13125	B0A54_14020	A0A4U0UIU5	A0A4U0UHD6	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	Multifunctional tryptophan biosynthesis protein; Trifunctional enzyme bearing the Gln amidotransferase (GATase) domain of anthranilate synthase, indole-glycerolphosphate synthase, and phosphoribosylanthranilate isomerase activities.	0.996