STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0A54_10029Pre-mRNA-splicing factor CWC21. (177 aa)    
Predicted Functional Partners:
B0A54_13779
WD_REPEATS_REGION domain-containing protein.
   
 0.992
B0A54_03995
WD_REPEATS_REGION domain-containing protein.
   
 0.992
B0A54_06020
Sm domain-containing protein.
    
 0.991
B0A54_01570
Tr-type G domain-containing protein.
    
 
 0.983
B0A54_16709
Tr-type G domain-containing protein.
    
 
 0.983
B0A54_12854
Pre-mRNA-processing-splicing factor 8.
   
 
 0.982
B0A54_00033
Pre-mRNA-processing-splicing factor 8.
   
 
 0.982
B0A54_12993
Pre-mRNA-splicing factor ini1.
    
 
 0.981
B0A54_05544
Pre-mRNA-splicing factor cwc22.
    
 0.981
B0A54_05760
Pre-mRNA-splicing factor cwc22.
    
 0.981
Your Current Organism:
Friedmanniomyces endolithicus
NCBI taxonomy Id: 329885
Other names: CCFEE 5208, F. endolithicus
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.