B0A54_07242 protein (Friedmanniomyces endolithicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A54_07242

Vacuolar protein 8. (576 aa)

Predicted Functional Partners:

B0A54_01433

0.947

B0A54_00172

0.947

B0A54_00676

0.921

B0A54_01200

0.921

B0A54_01202

0.921

B0A54_12712

0.735

B0A54_11482

0.735

B0A54_08239

0.633

B0A54_02774

0.633

B0A54_05681

0.624

Your Current Organism:

Friedmanniomyces endolithicus

NCBI taxonomy Id: 329885
Other names: CCFEE 5208, F. endolithicus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A54_00172	B0A54_00676	A0A4U0VLY0	A0A4U0VH87	Uncharacterized protein.	Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily.	0.919
B0A54_00172	B0A54_01200	A0A4U0VLY0	A0A4U0VIX2	Uncharacterized protein.	Helo_like_N domain-containing protein.	0.919
B0A54_00172	B0A54_01202	A0A4U0VLY0	A0A4U0VL60	Uncharacterized protein.	Uncharacterized protein.	0.919
B0A54_00172	B0A54_07242	A0A4U0VLY0	A0A4U0V0Z1	Uncharacterized protein.	Vacuolar protein 8.	0.947
B0A54_00676	B0A54_00172	A0A4U0VH87	A0A4U0VLY0	Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily.	Uncharacterized protein.	0.919
B0A54_00676	B0A54_01433	A0A4U0VH87	A0A4U0VG92	Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily.	Putative lipase ATG15.	0.919
B0A54_00676	B0A54_07242	A0A4U0VH87	A0A4U0V0Z1	Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily.	Vacuolar protein 8.	0.921
B0A54_01200	B0A54_00172	A0A4U0VIX2	A0A4U0VLY0	Helo_like_N domain-containing protein.	Uncharacterized protein.	0.919
B0A54_01200	B0A54_01433	A0A4U0VIX2	A0A4U0VG92	Helo_like_N domain-containing protein.	Putative lipase ATG15.	0.919
B0A54_01200	B0A54_07242	A0A4U0VIX2	A0A4U0V0Z1	Helo_like_N domain-containing protein.	Vacuolar protein 8.	0.921
B0A54_01202	B0A54_00172	A0A4U0VL60	A0A4U0VLY0	Uncharacterized protein.	Uncharacterized protein.	0.919
B0A54_01202	B0A54_01433	A0A4U0VL60	A0A4U0VG92	Uncharacterized protein.	Putative lipase ATG15.	0.919
B0A54_01202	B0A54_07242	A0A4U0VL60	A0A4U0V0Z1	Uncharacterized protein.	Vacuolar protein 8.	0.921
B0A54_01433	B0A54_00676	A0A4U0VG92	A0A4U0VH87	Putative lipase ATG15.	Autophagy-related protein 13; Belongs to the ATG13 family. Fungi subfamily.	0.919
B0A54_01433	B0A54_01200	A0A4U0VG92	A0A4U0VIX2	Putative lipase ATG15.	Helo_like_N domain-containing protein.	0.919
B0A54_01433	B0A54_01202	A0A4U0VG92	A0A4U0VL60	Putative lipase ATG15.	Uncharacterized protein.	0.919
B0A54_01433	B0A54_07242	A0A4U0VG92	A0A4U0V0Z1	Putative lipase ATG15.	Vacuolar protein 8.	0.947
B0A54_02774	B0A54_07242	A0A4U0VGE0	A0A4U0V0Z1	Palmitoyltransferase; Belongs to the DHHC palmitoyltransferase family.	Vacuolar protein 8.	0.633
B0A54_05681	B0A54_07242	A0A4U0USF3	A0A4U0V0Z1	Uncharacterized protein; Belongs to the synaptobrevin family.	Vacuolar protein 8.	0.624
B0A54_07242	B0A54_00172	A0A4U0V0Z1	A0A4U0VLY0	Vacuolar protein 8.	Uncharacterized protein.	0.947