B0A54_05806 protein (Friedmanniomyces endolithicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A54_05806

Uncharacterized protein. (2543 aa)

Predicted Functional Partners:

B0A54_10358

0.983

B0A54_01662

0.983

B0A54_09022

0.983

B0A54_08795

0.979

B0A54_07814

0.979

B0A54_04935

0.978

B0A54_05744

0.977

B0A54_06525

0.977

B0A54_16675

0.976

B0A54_12996

0.976

Your Current Organism:

Friedmanniomyces endolithicus

NCBI taxonomy Id: 329885
Other names: CCFEE 5208, F. endolithicus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A54_01662	B0A54_04935	A0A4U0UU27	A0A4U0V5Y0	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	0.998
B0A54_01662	B0A54_05744	A0A4U0UU27	A0A4U0V472	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	0.998
B0A54_01662	B0A54_05806	A0A4U0UU27	A0A4U0V6A2	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.983
B0A54_01662	B0A54_06525	A0A4U0UU27	A0A4V5N5P9	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	Uncharacterized protein.	0.998
B0A54_01662	B0A54_07814	A0A4U0UU27	A0A4U0UX41	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	Guanine nucleotide-binding protein subunit beta-like protein.	0.998
B0A54_01662	B0A54_08795	A0A4U0UU27	A0A4U0UVD7	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
B0A54_01662	B0A54_09022	A0A4U0UU27	A0A4U0UX66	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	Putative ABC transporter ATP-binding protein C29A3.09c.	0.704
B0A54_01662	B0A54_10358	A0A4U0UU27	A0A4U0UTM2	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	Putative ABC transporter ATP-binding protein C29A3.09c.	0.704
B0A54_01662	B0A54_12996	A0A4U0UU27	A0A4U0TZP5	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	60S ribosomal protein L43.	0.998
B0A54_01662	B0A54_16675	A0A4U0UU27	A0A4U0TUL1	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	40S ribosomal protein S19.	0.999
B0A54_04935	B0A54_01662	A0A4U0V5Y0	A0A4U0UU27	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	40S ribosomal protein S13; Belongs to the universal ribosomal protein uS15 family.	0.998
B0A54_04935	B0A54_05744	A0A4U0V5Y0	A0A4U0V472	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L27a; Belongs to the universal ribosomal protein uL15 family.	0.999
B0A54_04935	B0A54_05806	A0A4U0V5Y0	A0A4U0V6A2	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.978
B0A54_04935	B0A54_06525	A0A4U0V5Y0	A0A4V5N5P9	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Uncharacterized protein.	0.999
B0A54_04935	B0A54_07814	A0A4U0V5Y0	A0A4U0UX41	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Guanine nucleotide-binding protein subunit beta-like protein.	0.997
B0A54_04935	B0A54_08795	A0A4U0V5Y0	A0A4U0UVD7	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Ribosomal protein L15; Belongs to the eukaryotic ribosomal protein eL15 family.	0.999
B0A54_04935	B0A54_09022	A0A4U0V5Y0	A0A4U0UX66	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Putative ABC transporter ATP-binding protein C29A3.09c.	0.693
B0A54_04935	B0A54_10358	A0A4U0V5Y0	A0A4U0UTM2	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	Putative ABC transporter ATP-binding protein C29A3.09c.	0.693
B0A54_04935	B0A54_12996	A0A4U0V5Y0	A0A4U0TZP5	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	60S ribosomal protein L43.	0.999
B0A54_04935	B0A54_16675	A0A4U0V5Y0	A0A4U0TUL1	60S ribosomal protein L3; Belongs to the universal ribosomal protein uL3 family.	40S ribosomal protein S19.	0.998