STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B0A54_00447Uncharacterized protein. (714 aa)    
Predicted Functional Partners:
B0A54_08252
Uncharacterized protein.
    
 0.804
B0A54_02788
Uncharacterized protein.
    
 0.804
B0A54_16902
Uncharacterized protein.
    
 0.673
B0A54_14290
Uncharacterized protein; Belongs to the DEAD box helicase family.
    
 0.673
B0A54_13987
ATP-dependent RNA helicase ded1; Belongs to the DEAD box helicase family.
    
 0.673
B0A54_10161
ATP-dependent RNA helicase ded1; Belongs to the DEAD box helicase family.
    
 0.673
B0A54_04171
ATP-dependent RNA helicase DBP3; Belongs to the DEAD box helicase family.
    
 0.654
B0A54_02222
ATP-dependent RNA helicase DBP2; Belongs to the DEAD box helicase family.
    
 0.654
B0A54_02633
ATP-dependent RNA helicase DBP3; Belongs to the DEAD box helicase family.
    
 0.654
B0A54_00271
ATP-dependent RNA helicase dbp2; Belongs to the DEAD box helicase family.
    
 0.654
Your Current Organism:
Friedmanniomyces endolithicus
NCBI taxonomy Id: 329885
Other names: CCFEE 5208, F. endolithicus
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