B0A54_10065 protein (Friedmanniomyces endolithicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A54_10065

Uncharacterized protein. (210 aa)

Predicted Functional Partners:

B0A54_16137

0.895

B0A54_09272

0.895

B0A54_02428

0.895

B0A54_16965

0.870

B0A54_09280

0.870

B0A54_10136

0.813

B0A54_05127

0.813

B0A54_06239

0.811

B0A54_03143

0.811

B0A54_09747

0.779

Your Current Organism:

Friedmanniomyces endolithicus

NCBI taxonomy Id: 329885
Other names: CCFEE 5208, F. endolithicus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A54_02428	B0A54_09280	A0A4U0VEK8	A0A4U0UW14	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	1,4-alpha-glucan-branching enzyme.	0.992
B0A54_02428	B0A54_09747	A0A4U0VEK8	A0A4U0US05	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.591
B0A54_02428	B0A54_10065	A0A4U0VEK8	A0A4V5N9B7	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	Uncharacterized protein.	0.895
B0A54_02428	B0A54_16965	A0A4U0VEK8	A0A4U0TWU8	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	1,4-alpha-glucan-branching enzyme.	0.992
B0A54_03143	B0A54_05127	A0A4U0V8D1	A0A4U0V748	DNA polymerase.	Uncharacterized protein.	0.998
B0A54_03143	B0A54_10065	A0A4U0V8D1	A0A4V5N9B7	DNA polymerase.	Uncharacterized protein.	0.811
B0A54_03143	B0A54_10136	A0A4U0V8D1	A0A4U0UU80	DNA polymerase.	Uncharacterized protein.	0.998
B0A54_05127	B0A54_03143	A0A4U0V748	A0A4U0V8D1	Uncharacterized protein.	DNA polymerase.	0.998
B0A54_05127	B0A54_06239	A0A4U0V748	A0A4U0UYZ9	Uncharacterized protein.	DNA polymerase.	0.998
B0A54_05127	B0A54_10065	A0A4U0V748	A0A4V5N9B7	Uncharacterized protein.	Uncharacterized protein.	0.813
B0A54_06239	B0A54_05127	A0A4U0UYZ9	A0A4U0V748	DNA polymerase.	Uncharacterized protein.	0.998
B0A54_06239	B0A54_10065	A0A4U0UYZ9	A0A4V5N9B7	DNA polymerase.	Uncharacterized protein.	0.811
B0A54_06239	B0A54_10136	A0A4U0UYZ9	A0A4U0UU80	DNA polymerase.	Uncharacterized protein.	0.998
B0A54_09272	B0A54_09280	A0A4U0UQT4	A0A4U0UW14	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	1,4-alpha-glucan-branching enzyme.	0.992
B0A54_09272	B0A54_09747	A0A4U0UQT4	A0A4U0US05	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.591
B0A54_09272	B0A54_10065	A0A4U0UQT4	A0A4V5N9B7	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	Uncharacterized protein.	0.895
B0A54_09272	B0A54_16965	A0A4U0UQT4	A0A4U0TWU8	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	1,4-alpha-glucan-branching enzyme.	0.992
B0A54_09280	B0A54_02428	A0A4U0UW14	A0A4U0VEK8	1,4-alpha-glucan-branching enzyme.	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	0.992
B0A54_09280	B0A54_09272	A0A4U0UW14	A0A4U0UQT4	1,4-alpha-glucan-branching enzyme.	Glycogen [starch] synthase; Transfers the glycosyl residue from UDP-Glc to the non- reducing end of alpha-1,4-glucan.	0.992
B0A54_09280	B0A54_09747	A0A4U0UW14	A0A4U0US05	1,4-alpha-glucan-branching enzyme.	UDP-glucose 4-epimerase; Belongs to the NAD(P)-dependent epimerase/dehydratase family.	0.554