B0A54_00614 protein (Friedmanniomyces endolithicus)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B0A54_00614

4HBT domain-containing protein. (177 aa)

Predicted Functional Partners:

B0A54_00832

0.710

B0A54_09755

0.680

B0A54_08768

0.680

B0A54_07676

0.627

B0A54_01475

0.627

B0A54_15243

0.542

B0A54_06860

0.542

B0A54_03194

0.542

B0A54_03864

0.542

B0A54_02661

0.542

Your Current Organism:

Friedmanniomyces endolithicus

NCBI taxonomy Id: 329885
Other names: CCFEE 5208, F. endolithicus

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B0A54_00614	B0A54_00832	A0A4V5N9Q2	A0A4U0VJX1	4HBT domain-containing protein.	6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.	0.710
B0A54_00614	B0A54_01475	A0A4V5N9Q2	A0A4U0VI63	4HBT domain-containing protein.	PNP_UDP_1 domain-containing protein.	0.627
B0A54_00614	B0A54_02661	A0A4V5N9Q2	A0A4U0VE88	4HBT domain-containing protein.	PH domain-containing protein.	0.542
B0A54_00614	B0A54_03194	A0A4V5N9Q2	A0A4U0V8H4	4HBT domain-containing protein.	Uncharacterized protein.	0.542
B0A54_00614	B0A54_03864	A0A4V5N9Q2	A0A4U0VD45	4HBT domain-containing protein.	PH domain-containing protein.	0.542
B0A54_00614	B0A54_06860	A0A4V5N9Q2	A0A4U0V1E0	4HBT domain-containing protein.	Uncharacterized protein.	0.542
B0A54_00614	B0A54_07676	A0A4V5N9Q2	A0A4U0V0P4	4HBT domain-containing protein.	PNP_UDP_1 domain-containing protein.	0.627
B0A54_00614	B0A54_08768	A0A4V5N9Q2	A0A4U0US86	4HBT domain-containing protein.	4HBT domain-containing protein.	0.680
B0A54_00614	B0A54_09755	A0A4V5N9Q2	A0A4U0UQ05	4HBT domain-containing protein.	4HBT domain-containing protein.	0.680
B0A54_00614	B0A54_15243	A0A4V5N9Q2	A0A4U0UFR7	4HBT domain-containing protein.	Coronin; Belongs to the WD repeat coronin family.	0.542
B0A54_00832	B0A54_00614	A0A4U0VJX1	A0A4V5N9Q2	6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.	4HBT domain-containing protein.	0.710
B0A54_00832	B0A54_02661	A0A4U0VJX1	A0A4U0VE88	6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.	PH domain-containing protein.	0.949
B0A54_00832	B0A54_03864	A0A4U0VJX1	A0A4U0VD45	6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.	PH domain-containing protein.	0.949
B0A54_00832	B0A54_15243	A0A4U0VJX1	A0A4U0UFR7	6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.	Coronin; Belongs to the WD repeat coronin family.	0.949
B0A54_01475	B0A54_00614	A0A4U0VI63	A0A4V5N9Q2	PNP_UDP_1 domain-containing protein.	4HBT domain-containing protein.	0.627
B0A54_02661	B0A54_00614	A0A4U0VE88	A0A4V5N9Q2	PH domain-containing protein.	4HBT domain-containing protein.	0.542
B0A54_02661	B0A54_00832	A0A4U0VE88	A0A4U0VJX1	PH domain-containing protein.	6,7-dimethyl-8-ribityllumazine synthase; Catalyzes the formation of 6,7-dimethyl-8-ribityllumazine by condensation of 5-amino-6-(D-ribitylamino)uracil with 3,4-dihydroxy-2- butanone 4-phosphate. This is the penultimate step in the biosynthesis of riboflavin.	0.949
B0A54_03194	B0A54_00614	A0A4U0V8H4	A0A4V5N9Q2	Uncharacterized protein.	4HBT domain-containing protein.	0.542
B0A54_03194	B0A54_08768	A0A4U0V8H4	A0A4U0US86	Uncharacterized protein.	4HBT domain-containing protein.	0.875
B0A54_03194	B0A54_09755	A0A4U0V8H4	A0A4U0UQ05	Uncharacterized protein.	4HBT domain-containing protein.	0.875