KWZ75194.1 protein (Winkia neuii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

KWZ75194.1

KEGG: efc:EFAU004_01297 1.1e-19 HAD superfamily hydrolase K07024. (344 aa)

Predicted Functional Partners:

serS

0.826

KWZ73209.1

0.735

KWZ75196.1

0.580

KWZ75193.1

0.575

KWZ72459.1

0.508

KWZ74919.1

0.458

KWZ75197.1

0.437

KWZ72791.1

0.410

Your Current Organism:

Winkia neuii

NCBI taxonomy Id: 33007
Other names: ATCC 51847, Actinomyces neuii, CCUG 32252, CIP 104015, DSM 8576, W. neuii, strain 97/90

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KWZ72459.1	KWZ75194.1	HMPREF3198_01815	HMPREF3198_00275	KEGG: apb:SAR116_2479 2.9e-10 major facilitator superfamily protein; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: efc:EFAU004_01297 1.1e-19 HAD superfamily hydrolase K07024.	0.508
KWZ72791.1	KWZ74919.1	HMPREF3198_01652	HMPREF3198_00562	Hypothetical protein.	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.	0.616
KWZ72791.1	KWZ75194.1	HMPREF3198_01652	HMPREF3198_00275	Hypothetical protein.	KEGG: efc:EFAU004_01297 1.1e-19 HAD superfamily hydrolase K07024.	0.410
KWZ73209.1	KWZ75194.1	HMPREF3198_01568	HMPREF3198_00275	Cof-like hydrolase; KEGG: bbp:BBPR_1710 1.7e-37 hydrolase.	KEGG: efc:EFAU004_01297 1.1e-19 HAD superfamily hydrolase K07024.	0.735
KWZ74919.1	KWZ72791.1	HMPREF3198_00562	HMPREF3198_01652	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.	Hypothetical protein.	0.616
KWZ74919.1	KWZ75194.1	HMPREF3198_00562	HMPREF3198_00275	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.	KEGG: efc:EFAU004_01297 1.1e-19 HAD superfamily hydrolase K07024.	0.458
KWZ75193.1	KWZ75194.1	HMPREF3198_00274	HMPREF3198_00275	N-acylglucosamine 2-epimerase; KEGG: ase:ACPL_3867 7.4e-85 yihS-like sugar isomerase.	KEGG: efc:EFAU004_01297 1.1e-19 HAD superfamily hydrolase K07024.	0.575
KWZ75193.1	serS	HMPREF3198_00274	HMPREF3198_00276	N-acylglucosamine 2-epimerase; KEGG: ase:ACPL_3867 7.4e-85 yihS-like sugar isomerase.	serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).	0.545
KWZ75194.1	KWZ72459.1	HMPREF3198_00275	HMPREF3198_01815	KEGG: efc:EFAU004_01297 1.1e-19 HAD superfamily hydrolase K07024.	KEGG: apb:SAR116_2479 2.9e-10 major facilitator superfamily protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.508
KWZ75194.1	KWZ72791.1	HMPREF3198_00275	HMPREF3198_01652	KEGG: efc:EFAU004_01297 1.1e-19 HAD superfamily hydrolase K07024.	Hypothetical protein.	0.410
KWZ75194.1	KWZ73209.1	HMPREF3198_00275	HMPREF3198_01568	KEGG: efc:EFAU004_01297 1.1e-19 HAD superfamily hydrolase K07024.	Cof-like hydrolase; KEGG: bbp:BBPR_1710 1.7e-37 hydrolase.	0.735
KWZ75194.1	KWZ74919.1	HMPREF3198_00275	HMPREF3198_00562	KEGG: efc:EFAU004_01297 1.1e-19 HAD superfamily hydrolase K07024.	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.	0.458
KWZ75194.1	KWZ75193.1	HMPREF3198_00275	HMPREF3198_00274	KEGG: efc:EFAU004_01297 1.1e-19 HAD superfamily hydrolase K07024.	N-acylglucosamine 2-epimerase; KEGG: ase:ACPL_3867 7.4e-85 yihS-like sugar isomerase.	0.575
KWZ75194.1	KWZ75196.1	HMPREF3198_00275	HMPREF3198_00277	KEGG: efc:EFAU004_01297 1.1e-19 HAD superfamily hydrolase K07024.	KEGG: mcu:HMPREF0573_10901 6.2e-168 gdh; glutamate dehydrogenase K00262; Psort location: Cytoplasmic, score: 9.97; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	0.580
KWZ75194.1	KWZ75197.1	HMPREF3198_00275	HMPREF3198_00278	KEGG: efc:EFAU004_01297 1.1e-19 HAD superfamily hydrolase K07024.	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.437
KWZ75194.1	serS	HMPREF3198_00275	HMPREF3198_00276	KEGG: efc:EFAU004_01297 1.1e-19 HAD superfamily hydrolase K07024.	serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).	0.826
KWZ75196.1	KWZ75194.1	HMPREF3198_00277	HMPREF3198_00275	KEGG: mcu:HMPREF0573_10901 6.2e-168 gdh; glutamate dehydrogenase K00262; Psort location: Cytoplasmic, score: 9.97; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	KEGG: efc:EFAU004_01297 1.1e-19 HAD superfamily hydrolase K07024.	0.580
KWZ75196.1	KWZ75197.1	HMPREF3198_00277	HMPREF3198_00278	KEGG: mcu:HMPREF0573_10901 6.2e-168 gdh; glutamate dehydrogenase K00262; Psort location: Cytoplasmic, score: 9.97; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.568
KWZ75196.1	serS	HMPREF3198_00277	HMPREF3198_00276	KEGG: mcu:HMPREF0573_10901 6.2e-168 gdh; glutamate dehydrogenase K00262; Psort location: Cytoplasmic, score: 9.97; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.	serine--tRNA ligase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).	0.580
KWZ75197.1	KWZ75194.1	HMPREF3198_00278	HMPREF3198_00275	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: efc:EFAU004_01297 1.1e-19 HAD superfamily hydrolase K07024.	0.437