STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KWZ75000.1Hypothetical protein; KEGG: rha:RHA1_ro02466 1.2e-31 spermidine synthase K00797; Psort location: Cytoplasmic, score: 7.50. (272 aa)    
Predicted Functional Partners:
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
  
 0.892
KWZ74836.1
Putative aspartate transaminase; KEGG: mcu:HMPREF0573_11145 2.9e-154 aspC; aspartate transaminase.
   
  0.783
ispF
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Involved in the biosynthesis of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP), two major building blocks of isoprenoid compounds. Catalyzes the conversion of 4-diphosphocytidyl-2- C-methyl-D-erythritol 2-phosphate (CDP-ME2P) to 2-C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-CPP) with a corresponding release of cytidine 5-monophosphate (CMP).
       0.777
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
 
 0.602
KWZ74782.1
Orn/Lys/Arg decarboxylase, major domain protein; KEGG: eic:NT01EI_3411 8.3e-260 ornithine decarboxylase K01581; Psort location: Cytoplasmic, score: 9.97.
  
 
 0.573
KWZ75002.1
Transporter, major facilitator family protein; KEGG: cnc:CNE_2c18790 0.00013 bclA; benzoate--CoA ligase BclA K05548; Psort location: CytoplasmicMembrane, score: 10.00.
       0.552
trmD
tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
  
 
  0.495
KWZ72885.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55; Belongs to the UPF0246 family.
  
     0.494
KWZ75266.1
KEGG: apb:SAR116_0757 1.2e-07 universal stress protein family protein.
 
      0.487
KWZ74932.1
Type III restriction enzyme, res subunit; KEGG: hvo:HVO_1598 7.5e-13 rad25c; DNA repair helicase Rad25; Psort location: Cytoplasmic, score: 7.50.
  
     0.471
Your Current Organism:
Winkia neuii
NCBI taxonomy Id: 33007
Other names: ATCC 51847, Actinomyces neuii, CCUG 32252, CIP 104015, DSM 8576, W. neuii, strain 97/90
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