Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dacBKEGG: cfi:Celf_0555 2.1e-64 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase; K07259 D-alanyl-D-alanine carboxypeptidase / D-alanyl-D-alanine-endopeptidase (penicillin-binding protein 4); Psort location: Extracellular, score: 9.73. (488 aa)    
Predicted Functional Partners:
tilS
tRNA(Ile)-lysidine synthetase; Ligates lysine onto the cytidine present at position 34 of the AUA codon-specific tRNA(Ile) that contains the anticodon CAU, in an ATP-dependent manner. Cytidine is converted to lysidine, thus changing the amino acid specificity of the tRNA from methionine to isoleucine. Belongs to the tRNA(Ile)-lysidine synthase family.
     
 0.868
hpt
KEGG: tbi:Tbis_3448 1.3e-66 hypoxanthine phosphoribosyltransferase K00760; Psort location: Cytoplasmic, score: 9.97; Belongs to the purine/pyrimidine phosphoribosyltransferase family.
     
 0.781
ppa
Inorganic diphosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
       0.647
ftsH
ATP-dependent metallopeptidase HflB; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
       0.539
folE
GTP cyclohydrolase I; KEGG: adg:Adeg_0594 1.6e-59 folE; GTP cyclohydrolase I K01495; Psort location: Cytoplasmic, score: 7.50.
       0.510
KWZ75061.1
Putative penicillin-binding protein A; KEGG: jde:Jden_0172 1.5e-125 peptidoglycan glycosyltransferase K05364; Psort location: CytoplasmicMembrane, score: 9.51.
      
 0.501
KWZ74679.1
Transglycosylase; KEGG: ahe:Arch_1803 1.7e-146 peptidoglycan glycosyltransferase; Psort location: CytoplasmicMembrane, score: 9.99.
      
 0.501
KWZ74197.1
Transglycosylase; KEGG: iva:Isova_2701 2.4e-136 peptidoglycan glycosyltransferase; Psort location: CytoplasmicMembrane, score: 9.51.
      
 0.484
KWZ74773.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.466
KWZ72957.1
Aldose 1-epimerase; KEGG: agr:AGROH133_12875 2.4e-31 putative aldose-1-epimerase; Psort location: Cytoplasmic, score: 7.50.
  
    0.450
Your Current Organism:
Winkia neuii
NCBI taxonomy Id: 33007
Other names: ATCC 51847, Actinomyces neuii, CCUG 32252, CIP 104015, DSM 8576, W. neuii, strain 97/90
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