STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KWZ74925.1Efflux ABC transporter, permease protein; Part of the ABC transporter FtsEX involved in cellular division; Belongs to the ABC-4 integral membrane protein family. FtsX subfamily. (304 aa)    
Predicted Functional Partners:
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
 
 0.999
KWZ74926.1
Peptidase, M23 family; KEGG: aai:AARI_12200 5.6e-32 peptidase M23; Psort location: Extracellular, score: 9.73.
 
  
 0.912
KWZ74771.1
NlpC/P60 family protein; KEGG: bbp:BBPR_1480 4.2e-20 cell wall-associated protein; Psort location: Extracellular, score: 9.73.
 
 
 
 0.861
KWZ75267.1
NlpC/P60 family protein; KEGG: bbp:BBPR_1480 6.6e-29 cell wall-associated protein; Psort location: Extracellular, score: 9.72.
 
 
 
 0.855
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
  
  
 0.738
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
     
 0.683
KWZ74921.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.559
KWZ74920.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.546
KWZ72541.1
Cell cycle protein, FtsW/RodA/SpoVE family; KEGG: kfl:Kfla_2886 3.4e-57 cell division protein FtsW; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the SEDS family.
 
  
 0.540
KWZ74919.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.538
Your Current Organism:
Winkia neuii
NCBI taxonomy Id: 33007
Other names: ATCC 51847, Actinomyces neuii, CCUG 32252, CIP 104015, DSM 8576, W. neuii, strain 97/90
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