STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KWZ74701.1r3H domain protein; KEGG: sgg:SGGBAA2069_c20720 6.2e-14 jag; Jag family RNA-binding protein K06346; Psort location: Cytoplasmic, score: 7.50. (192 aa)    
Predicted Functional Partners:
KWZ74700.1
Membrane protein insertase, YidC/Oxa1 family; KEGG: ptm:GSPATT00006636001 0.00047 hypothetical protein; K12735 peptidyl-prolyl cis-trans isomerase-like 4; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.976
rsmG
16S rRNA methyltransferase GidB; Specifically methylates the N7 position of guanine in position 518 of 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.
  
  
 0.941
KWZ72475.1
KH domain protein; KEGG: ttm:Tthe_1490 0.0080 ribonuclease III K03685; Psort location: Cytoplasmic, score: 7.50; Belongs to the UPF0109 family.
  
 
 0.937
rnpA
Ribonuclease P protein component; RNaseP catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. It can also cleave other RNA substrates such as 4.5S RNA. The protein component plays an auxiliary but essential role in vivo by binding to the 5'-leader sequence and broadening the substrate specificity of the ribozyme.
  
    0.815
KWZ72590.1
S1 RNA binding domain protein; KEGG: ahe:Arch_1072 9.9e-209 ribonuclease, Rne/Rng family; K08300 ribonuclease E; Psort location: Cytoplasmic, score: 9.97.
   
   0.780
KWZ74699.1
Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
       0.700
lgt
Prolipoprotein diacylglyceryl transferase; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins; Belongs to the Lgt family.
 
    0.697
rpmH
Ribosomal protein L34; KEGG: mmn:midi_01062 1.6e-09 rpmH; 50S ribosomal protein L34P K02914; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bL34 family.
     
 0.633
rplP
Ribosomal protein L16; Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs; Belongs to the universal ribosomal protein uL16 family.
   
    0.625
trpA
Tryptophan synthase, alpha subunit; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family.
   
    0.625
Your Current Organism:
Winkia neuii
NCBI taxonomy Id: 33007
Other names: ATCC 51847, Actinomyces neuii, CCUG 32252, CIP 104015, DSM 8576, W. neuii, strain 97/90
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