KWZ74290.1 protein (Winkia neuii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

KWZ74290.1

ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78. (260 aa)

Predicted Functional Partners:

KWZ74289.1

0.773

KWZ74291.1

0.773

KWZ74528.1

0.680

KWZ74682.1

0.660

KWZ74168.1

0.651

KWZ72266.1

0.627

KWZ72991.1

0.584

atpD

0.563

KWZ75259.1

0.550

KWZ72036.1

0.550

Your Current Organism:

Winkia neuii

NCBI taxonomy Id: 33007
Other names: ATCC 51847, Actinomyces neuii, CCUG 32252, CIP 104015, DSM 8576, W. neuii, strain 97/90

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KWZ72036.1	KWZ74290.1	HMPREF3198_02128	HMPREF3198_00848	KEGG: snc:HMPREF0837_10890 3.4e-64 ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 9.96.	ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.	0.550
KWZ72266.1	KWZ74290.1	HMPREF3198_02020	HMPREF3198_00848	KEGG: bha:BH3673 1.6e-43 ABC transporter ATP-binding protein; K09810 lipoprotein-releasing system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.51.	ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.	0.627
KWZ72991.1	KWZ74290.1	HMPREF3198_01348	HMPREF3198_00848	ATP synthase, delta/epsilon subunit, beta-sandwich domain protein; KEGG: iva:Isova_2299 2.7e-16 ATP synthase subunit epsilon; K02114 F-type H+-transporting ATPase subunit epsilon.	ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.	0.584
KWZ72991.1	atpD	HMPREF3198_01348	HMPREF3198_01349	ATP synthase, delta/epsilon subunit, beta-sandwich domain protein; KEGG: iva:Isova_2299 2.7e-16 ATP synthase subunit epsilon; K02114 F-type H+-transporting ATPase subunit epsilon.	ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	0.999
KWZ74168.1	KWZ74290.1	HMPREF3198_00725	HMPREF3198_00848	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.	0.651
KWZ74289.1	KWZ74290.1	HMPREF3198_00847	HMPREF3198_00848	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.	0.773
KWZ74289.1	KWZ74291.1	HMPREF3198_00847	HMPREF3198_00849	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.	Hypothetical protein.	0.773
KWZ74290.1	KWZ72036.1	HMPREF3198_00848	HMPREF3198_02128	ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.	KEGG: snc:HMPREF0837_10890 3.4e-64 ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 9.96.	0.550
KWZ74290.1	KWZ72266.1	HMPREF3198_00848	HMPREF3198_02020	ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.	KEGG: bha:BH3673 1.6e-43 ABC transporter ATP-binding protein; K09810 lipoprotein-releasing system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.51.	0.627
KWZ74290.1	KWZ72991.1	HMPREF3198_00848	HMPREF3198_01348	ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.	ATP synthase, delta/epsilon subunit, beta-sandwich domain protein; KEGG: iva:Isova_2299 2.7e-16 ATP synthase subunit epsilon; K02114 F-type H+-transporting ATPase subunit epsilon.	0.584
KWZ74290.1	KWZ74168.1	HMPREF3198_00848	HMPREF3198_00725	ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.651
KWZ74290.1	KWZ74289.1	HMPREF3198_00848	HMPREF3198_00847	ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.773
KWZ74290.1	KWZ74291.1	HMPREF3198_00848	HMPREF3198_00849	ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.	Hypothetical protein.	0.773
KWZ74290.1	KWZ74528.1	HMPREF3198_00848	HMPREF3198_00703	ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.	ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.99.	0.680
KWZ74290.1	KWZ74682.1	HMPREF3198_00848	HMPREF3198_00675	ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.	KEGG: mzh:Mzhil_0706 3.3e-34 ABC transporter; K09810 lipoprotein-releasing system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.	0.660
KWZ74290.1	KWZ75259.1	HMPREF3198_00848	HMPREF3198_00148	ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.	Putative lipoprotein releasing system, ATP-binding protein; KEGG: ase:ACPL_3821 9.3e-55 spermidine/putrescine import ATP-binding protein potA K02003; Psort location: CytoplasmicMembrane, score: 8.78.	0.550
KWZ74290.1	atpD	HMPREF3198_00848	HMPREF3198_01349	ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.	ATP synthase F1, beta subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits.	0.563
KWZ74291.1	KWZ74289.1	HMPREF3198_00849	HMPREF3198_00847	Hypothetical protein.	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.773
KWZ74291.1	KWZ74290.1	HMPREF3198_00849	HMPREF3198_00848	Hypothetical protein.	ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.	0.773
KWZ74528.1	KWZ74290.1	HMPREF3198_00703	HMPREF3198_00848	ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.99.	ABC transporter, ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.	0.680