STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KWZ74410.1Helicase protein; KEGG: ffo:FFONT_1369 4.6e-17 DEAD/DEAH box helicase; K03726 helicase. (893 aa)    
Predicted Functional Partners:
fusA
Translation elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post-translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. EF-G/EF-2 s [...]
   
 0.942
KWZ74412.1
KEGG: fbr:FBFL15_2693 3.0e-168 putative type III restriction enzyme.
 
     0.903
KWZ74411.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.809
KWZ74419.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.807
KWZ74414.1
DNA binding domain, excisionase family; KEGG: wch:wcw_0245 1.3e-06 ptsN1; PTS system IIA protein; K02806 PTS system, nitrogen regulatory IIA component.
 
     0.781
KWZ75069.1
Peptidyl-prolyl cis-trans isomerase B; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
    
  0.774
KWZ72198.1
TIGR02687 family protein; Psort location: Cytoplasmic, score: 7.50.
    
  0.774
hrpB
KEGG: ach:Achl_1784 3.7e-186 ATP-dependent helicase HrpB; K03579 ATP-dependent helicase HrpB; Psort location: Cytoplasmic, score: 7.50.
    
 
 0.755
hrpA
KEGG: ahe:Arch_0127 0. ATP-dependent helicase HrpA; K03578 ATP-dependent helicase HrpA; Psort location: Cytoplasmic, score: 7.50.
    
 
 0.755
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
   
   0.744
Your Current Organism:
Winkia neuii
NCBI taxonomy Id: 33007
Other names: ATCC 51847, Actinomyces neuii, CCUG 32252, CIP 104015, DSM 8576, W. neuii, strain 97/90
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