STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KWZ74489.1RNB-like protein; KEGG: krh:KRH_17360 3.3e-82 rnr; putative ribonuclease R; Psort location: Cytoplasmic, score: 9.97. (565 aa)    
Predicted Functional Partners:
rph
tRNA nucleotidyltransferase; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
   
 0.999
KWZ72130.1
KEGG: bcv:Bcav_1962 4.9e-88 3'-5' exonuclease; K03684 ribonuclease D; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.947
KWZ72793.1
Hydrolase, NUDIX family; KEGG: krh:KRH_05700 4.6e-53 mutT; putative NTP pyrophosphohydrolase MutT; Psort location: Cytoplasmic, score: 7.50.
   
 0.937
KWZ72706.1
Hydrolase, NUDIX family; KEGG: mcu:HMPREF0573_11884 7.4e-46 nudF; putative ADP-ribose diphosphatase K01515; Psort location: Cytoplasmic, score: 7.50.
   
 0.910
rplW
Ribosomal protein L23; One of the early assembly proteins it binds 23S rRNA. One of the proteins that surrounds the polypeptide exit tunnel on the outside of the ribosome. Forms the main docking site for trigger factor binding to the ribosome; Belongs to the universal ribosomal protein uL23 family.
   
  0.776
KWZ72173.1
KEGG: fal:FRAAL1781 3.4e-199 rpsA; 30S ribosomal protein S1 K02945; Psort location: Cytoplasmic, score: 9.97.
   
 
 0.771
rplJ
Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
   
 0.769
rplV
Ribosomal protein L22; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
  
 
 0.752
rpmC
Ribosomal protein L29; KEGG: apb:SAR116_2399 9.6e-05 50S ribosomal protein L29 K02904; Psort location: Cytoplasmic, score: 7.50; Belongs to the universal ribosomal protein uL29 family.
  
 
  0.750
rplX
Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.
   
 0.741
Your Current Organism:
Winkia neuii
NCBI taxonomy Id: 33007
Other names: ATCC 51847, Actinomyces neuii, CCUG 32252, CIP 104015, DSM 8576, W. neuii, strain 97/90
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