KWZ72913.1 protein (Winkia neuii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KWZ72913.1

Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (99 aa)

Predicted Functional Partners:

KWZ72914.1

0.773

lepB

0.773

whiB-3

0.770

whiB

0.769

whiB-2

0.739

KWZ72124.1

0.700

KWZ74931.1

0.681

KWZ72910.1

0.673

KWZ72911.1

0.673

KWZ72912.1

0.673

Your Current Organism:

Winkia neuii

NCBI taxonomy Id: 33007
Other names: ATCC 51847, Actinomyces neuii, CCUG 32252, CIP 104015, DSM 8576, W. neuii, strain 97/90

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KWZ72124.1	KWZ72913.1	HMPREF3198_02222	HMPREF3198_01267	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	0.700
KWZ72124.1	KWZ74931.1	HMPREF3198_02222	HMPREF3198_00575	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein.	0.756
KWZ72124.1	whiB	HMPREF3198_02222	HMPREF3198_00628	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.	0.773
KWZ72124.1	whiB-2	HMPREF3198_02222	HMPREF3198_00757	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.	0.710
KWZ72124.1	whiB-3	HMPREF3198_02222	HMPREF3198_01408	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.	0.835
KWZ72910.1	KWZ72911.1	HMPREF3198_01264	HMPREF3198_01265	KEGG: apb:SAR116_0616 7.2e-32 DNA protecting protein DprA K04096; Psort location: Cytoplasmic, score: 7.50.	Mg chelatase-like protein; KEGG: bde:BDP_0806 1.7e-103 ATPase-like magnesium chelatase subunit ChlI K07391; Psort location: Cytoplasmic, score: 7.50.	0.983
KWZ72910.1	KWZ72912.1	HMPREF3198_01264	HMPREF3198_01266	KEGG: apb:SAR116_0616 7.2e-32 DNA protecting protein DprA K04096; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein; KEGG: sen:SACE_6045 2.4e-15 endonuclease K07460; Psort location: Cytoplasmic, score: 7.50; Belongs to the UPF0102 family.	0.850
KWZ72910.1	KWZ72913.1	HMPREF3198_01264	HMPREF3198_01267	KEGG: apb:SAR116_0616 7.2e-32 DNA protecting protein DprA K04096; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	0.673
KWZ72910.1	KWZ72914.1	HMPREF3198_01264	HMPREF3198_01268	KEGG: apb:SAR116_0616 7.2e-32 DNA protecting protein DprA K04096; Psort location: Cytoplasmic, score: 7.50.	Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.643
KWZ72910.1	lepB	HMPREF3198_01264	HMPREF3198_01269	KEGG: apb:SAR116_0616 7.2e-32 DNA protecting protein DprA K04096; Psort location: Cytoplasmic, score: 7.50.	KEGG: jde:Jden_0990 1.0e-46 signal peptidase I; K03100 signal peptidase I; Psort location: CytoplasmicMembrane, score: 9.51; Belongs to the peptidase S26 family.	0.703
KWZ72911.1	KWZ72910.1	HMPREF3198_01265	HMPREF3198_01264	Mg chelatase-like protein; KEGG: bde:BDP_0806 1.7e-103 ATPase-like magnesium chelatase subunit ChlI K07391; Psort location: Cytoplasmic, score: 7.50.	KEGG: apb:SAR116_0616 7.2e-32 DNA protecting protein DprA K04096; Psort location: Cytoplasmic, score: 7.50.	0.983
KWZ72911.1	KWZ72912.1	HMPREF3198_01265	HMPREF3198_01266	Mg chelatase-like protein; KEGG: bde:BDP_0806 1.7e-103 ATPase-like magnesium chelatase subunit ChlI K07391; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein; KEGG: sen:SACE_6045 2.4e-15 endonuclease K07460; Psort location: Cytoplasmic, score: 7.50; Belongs to the UPF0102 family.	0.876
KWZ72911.1	KWZ72913.1	HMPREF3198_01265	HMPREF3198_01267	Mg chelatase-like protein; KEGG: bde:BDP_0806 1.7e-103 ATPase-like magnesium chelatase subunit ChlI K07391; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	0.673
KWZ72911.1	KWZ72914.1	HMPREF3198_01265	HMPREF3198_01268	Mg chelatase-like protein; KEGG: bde:BDP_0806 1.7e-103 ATPase-like magnesium chelatase subunit ChlI K07391; Psort location: Cytoplasmic, score: 7.50.	Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.638
KWZ72911.1	lepB	HMPREF3198_01265	HMPREF3198_01269	Mg chelatase-like protein; KEGG: bde:BDP_0806 1.7e-103 ATPase-like magnesium chelatase subunit ChlI K07391; Psort location: Cytoplasmic, score: 7.50.	KEGG: jde:Jden_0990 1.0e-46 signal peptidase I; K03100 signal peptidase I; Psort location: CytoplasmicMembrane, score: 9.51; Belongs to the peptidase S26 family.	0.638
KWZ72912.1	KWZ72910.1	HMPREF3198_01266	HMPREF3198_01264	Hypothetical protein; KEGG: sen:SACE_6045 2.4e-15 endonuclease K07460; Psort location: Cytoplasmic, score: 7.50; Belongs to the UPF0102 family.	KEGG: apb:SAR116_0616 7.2e-32 DNA protecting protein DprA K04096; Psort location: Cytoplasmic, score: 7.50.	0.850
KWZ72912.1	KWZ72911.1	HMPREF3198_01266	HMPREF3198_01265	Hypothetical protein; KEGG: sen:SACE_6045 2.4e-15 endonuclease K07460; Psort location: Cytoplasmic, score: 7.50; Belongs to the UPF0102 family.	Mg chelatase-like protein; KEGG: bde:BDP_0806 1.7e-103 ATPase-like magnesium chelatase subunit ChlI K07391; Psort location: Cytoplasmic, score: 7.50.	0.876
KWZ72912.1	KWZ72913.1	HMPREF3198_01266	HMPREF3198_01267	Hypothetical protein; KEGG: sen:SACE_6045 2.4e-15 endonuclease K07460; Psort location: Cytoplasmic, score: 7.50; Belongs to the UPF0102 family.	Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.	0.673
KWZ72912.1	KWZ72914.1	HMPREF3198_01266	HMPREF3198_01268	Hypothetical protein; KEGG: sen:SACE_6045 2.4e-15 endonuclease K07460; Psort location: Cytoplasmic, score: 7.50; Belongs to the UPF0102 family.	Ribonuclease HII; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids.	0.638
KWZ72912.1	lepB	HMPREF3198_01266	HMPREF3198_01269	Hypothetical protein; KEGG: sen:SACE_6045 2.4e-15 endonuclease K07460; Psort location: Cytoplasmic, score: 7.50; Belongs to the UPF0102 family.	KEGG: jde:Jden_0990 1.0e-46 signal peptidase I; K03100 signal peptidase I; Psort location: CytoplasmicMembrane, score: 9.51; Belongs to the peptidase S26 family.	0.647