STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KWZ72927.1Transcriptional regulator, Fur family; KEGG: mct:MCR_0333 6.9e-11 fur; ferric uptake regulation protein Fur K03711; Psort location: Cytoplasmic, score: 9.97; Belongs to the Fur family. (131 aa)    
Predicted Functional Partners:
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.999
sigA
RNA polymerase sigma factor RpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
  
 
 0.882
KWZ72925.1
ABC transporter, ATP-binding protein; KEGG: bcv:Bcav_1774 3.2e-52 ABC transporter; K09817 zinc transport system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 8.78.
  
  
 0.868
KWZ72926.1
ABC 3 transport family protein; KEGG: pfe:PSF113_0030 9.7e-28 znuB; protein ZnuB K09816; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.855
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.853
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
   0.852
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
   
   0.850
KWZ72924.1
ABC transporter, substrate-binding protein; KEGG: saj:SaurJH9_2430 2.1e-31 ribulose-phosphate 3-epimerase K01783; Psort location: CytoplasmicMembrane, score: 9.68; Belongs to the bacterial solute-binding protein 9 family.
  
  
 0.843
KWZ72928.1
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.788
KWZ73939.1
Transcriptional repressor SmtB family protein; KEGG: pfe:PSF113_5488 6.1e-06 transcriptional regulator, ArsR family / Methyltransferase fusion; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.716
Your Current Organism:
Winkia neuii
NCBI taxonomy Id: 33007
Other names: ATCC 51847, Actinomyces neuii, CCUG 32252, CIP 104015, DSM 8576, W. neuii, strain 97/90
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