KWZ72949.1 protein (Winkia neuii) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KWZ72949.1

Hypothetical protein. (74 aa)

Predicted Functional Partners:

KWZ72948.1

0.773

lepA

0.581

rpsT

0.549

trmB

0.411

Your Current Organism:

Winkia neuii

NCBI taxonomy Id: 33007
Other names: ATCC 51847, Actinomyces neuii, CCUG 32252, CIP 104015, DSM 8576, W. neuii, strain 97/90

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KWZ72948.1	KWZ72949.1	HMPREF3198_01302	HMPREF3198_01303	Acyltransferase; KEGG: gpo:GPOL_c28780 3.8e-97 oatA; O-acetyltransferase OatA; Psort location: CytoplasmicMembrane, score: 10.00.	Hypothetical protein.	0.773
KWZ72948.1	lepA	HMPREF3198_01302	HMPREF3198_01301	Acyltransferase; KEGG: gpo:GPOL_c28780 3.8e-97 oatA; O-acetyltransferase OatA; Psort location: CytoplasmicMembrane, score: 10.00.	GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.	0.581
KWZ72948.1	rpsT	HMPREF3198_01302	HMPREF3198_01304	Acyltransferase; KEGG: gpo:GPOL_c28780 3.8e-97 oatA; O-acetyltransferase OatA; Psort location: CytoplasmicMembrane, score: 10.00.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.549
KWZ72948.1	trmB	HMPREF3198_01302	HMPREF3198_01300	Acyltransferase; KEGG: gpo:GPOL_c28780 3.8e-97 oatA; O-acetyltransferase OatA; Psort location: CytoplasmicMembrane, score: 10.00.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	0.411
KWZ72949.1	KWZ72948.1	HMPREF3198_01303	HMPREF3198_01302	Hypothetical protein.	Acyltransferase; KEGG: gpo:GPOL_c28780 3.8e-97 oatA; O-acetyltransferase OatA; Psort location: CytoplasmicMembrane, score: 10.00.	0.773
KWZ72949.1	lepA	HMPREF3198_01303	HMPREF3198_01301	Hypothetical protein.	GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.	0.581
KWZ72949.1	rpsT	HMPREF3198_01303	HMPREF3198_01304	Hypothetical protein.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.549
KWZ72949.1	trmB	HMPREF3198_01303	HMPREF3198_01300	Hypothetical protein.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	0.411
lepA	KWZ72948.1	HMPREF3198_01301	HMPREF3198_01302	GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.	Acyltransferase; KEGG: gpo:GPOL_c28780 3.8e-97 oatA; O-acetyltransferase OatA; Psort location: CytoplasmicMembrane, score: 10.00.	0.581
lepA	KWZ72949.1	HMPREF3198_01301	HMPREF3198_01303	GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.	Hypothetical protein.	0.581
lepA	rpsT	HMPREF3198_01301	HMPREF3198_01304	GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.955
lepA	trmB	HMPREF3198_01301	HMPREF3198_01300	GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	0.672
rpsT	KWZ72948.1	HMPREF3198_01304	HMPREF3198_01302	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	Acyltransferase; KEGG: gpo:GPOL_c28780 3.8e-97 oatA; O-acetyltransferase OatA; Psort location: CytoplasmicMembrane, score: 10.00.	0.549
rpsT	KWZ72949.1	HMPREF3198_01304	HMPREF3198_01303	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	Hypothetical protein.	0.549
rpsT	lepA	HMPREF3198_01304	HMPREF3198_01301	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.	0.955
trmB	KWZ72948.1	HMPREF3198_01300	HMPREF3198_01302	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	Acyltransferase; KEGG: gpo:GPOL_c28780 3.8e-97 oatA; O-acetyltransferase OatA; Psort location: CytoplasmicMembrane, score: 10.00.	0.411
trmB	KWZ72949.1	HMPREF3198_01300	HMPREF3198_01303	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	Hypothetical protein.	0.411
trmB	lepA	HMPREF3198_01300	HMPREF3198_01301	tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.	GTP-binding protein LepA; Required for accurate and efficient protein synthesis under certain stress conditions. May act as a fidelity factor of the translation reaction, by catalyzing a one-codon backward translocation of tRNAs on improperly translocated ribosomes. Back-translocation proceeds from a post-translocation (POST) complex to a pre- translocation (PRE) complex, thus giving elongation factor G a second chance to translocate the tRNAs correctly. Binds to ribosomes in a GTP- dependent manner.	0.672