STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KWZ73023.1DoxX family protein; Psort location: CytoplasmicMembrane, score: 8.16. (164 aa)    
Predicted Functional Partners:
KWZ73022.1
KEGG: reh:H16_A2563 4.8e-19 rpoE1; RNA polymerase sigma factor RpoE K03088; Psort location: Cytoplasmic, score: 9.97; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.640
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
       0.637
rsgA
Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
       0.637
KWZ73247.1
Transglycosylase-like domain protein.
  
     0.514
KWZ72608.1
e1-E2 ATPase; KEGG: bcv:Bcav_1945 2.6e-169 P-type HAD superfamily ATPase; K01552; Psort location: CytoplasmicMembrane, score: 10.00.
   
  0.513
KWZ73102.1
Hypothetical protein.
  
     0.498
KWZ75625.1
Hypothetical protein.
  
     0.491
KWZ72421.1
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.486
sbcD
Exonuclease SbcCD, D subunit; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family.
       0.456
KWZ73027.1
Putative DNA sulfur modification protein DndD; KEGG: cnc:CNE_2c01810 3.9e-88 sbcC; DNA repair exonuclease SbcC K03546; Psort location: Cytoplasmic, score: 9.97.
       0.456
Your Current Organism:
Winkia neuii
NCBI taxonomy Id: 33007
Other names: ATCC 51847, Actinomyces neuii, CCUG 32252, CIP 104015, DSM 8576, W. neuii, strain 97/90
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