STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KWZ73108.1TIGR00730 family protein; KEGG: gvg:HMPREF0421_20965 4.9e-72 fmt2; methionyl-tRNA formyltransferase K06966; Psort location: Cytoplasmic, score: 7.50; Belongs to the LOG family. (229 aa)    
Predicted Functional Partners:
KWZ73107.1
Hypothetical protein.
       0.636
miaA
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
     
 0.526
KWZ73110.1
Nucleotidyl transferase; KEGG: mlu:Mlut_04860 3.9e-63 mannose-1-phosphate guanylyltransferase (GDP); K00971 mannose-1-phosphate guanylyltransferase; Psort location: Cytoplasmic, score: 7.50.
       0.512
KWZ73109.1
Basic membrane protein.
       0.492
KWZ74480.1
Glycosyltransferase, group 2 family protein; KEGG: hla:Hlac_0696 7.2e-16 glycosyl transferase family 2; K00721 dolichol-phosphate mannosyltransferase.
     
 0.489
miaB
tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine.
      
 0.484
Your Current Organism:
Winkia neuii
NCBI taxonomy Id: 33007
Other names: ATCC 51847, Actinomyces neuii, CCUG 32252, CIP 104015, DSM 8576, W. neuii, strain 97/90
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