STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alrAlanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. (402 aa)    
Predicted Functional Partners:
KWZ73139.1
Hydrolase, P-loop family; KEGG: krh:KRH_06630 1.7e-33 alr; alanine racemase K01775; Psort location: Cytoplasmic, score: 7.50.
 
 0.995
ddl-2
D-ala D-ala ligase protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
  
 0.992
murF
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase; Involved in cell wall formation. Catalyzes the final step in the synthesis of UDP-N-acetylmuramoyl-pentapeptide, the precursor of murein; Belongs to the MurCDEF family. MurF subfamily.
  
 0.989
ald
KEGG: tbi:Tbis_0822 4.3e-121 alanine dehydrogenase; K00259 alanine dehydrogenase; Psort location: Extracellular, score: 9.60; Belongs to the AlaDH/PNT family.
  
 
 0.974
ddl
D-ala D-ala ligase protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
 
  
 0.961
KWZ74836.1
Putative aspartate transaminase; KEGG: mcu:HMPREF0573_11145 2.9e-154 aspC; aspartate transaminase.
    
 0.846
rimI
KEGG: bcv:Bcav_3070 1.9e-22 ribosomal-protein-alanine acetyltransferase; K03789 ribosomal-protein-alanine N-acetyltransferase; Psort location: CytoplasmicMembrane, score: 9.55.
 
   
 0.840
KWZ73166.1
Aminotransferase, class I/II; KEGG: bbp:BBPR_0680 4.8e-97 aminotransferase; Psort location: CytoplasmicMembrane, score: 8.16.
    
 0.832
tsaB
Universal bacterial protein YeaZ; KEGG: xce:Xcel_0675 3.3e-34 peptidase M22 glycoprotease; K14742 hypothetical protease; Psort location: Cytoplasmic, score: 7.50.
     
 0.800
murC
UDP-N-acetylmuramate--L-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
  
 0.772
Your Current Organism:
Winkia neuii
NCBI taxonomy Id: 33007
Other names: ATCC 51847, Actinomyces neuii, CCUG 32252, CIP 104015, DSM 8576, W. neuii, strain 97/90
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