STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KWZ73165.1Hypothetical protein; KEGG: bba:Bd0515 2.9e-19 uroporphyrin-III C-methyltransferase; Psort location: Cytoplasmic, score: 7.50. (114 aa)    
Predicted Functional Partners:
KWZ73166.1
Aminotransferase, class I/II; KEGG: bbp:BBPR_0680 4.8e-97 aminotransferase; Psort location: CytoplasmicMembrane, score: 8.16.
       0.668
KWZ73164.1
5'-nucleotidase protein; KEGG: ahe:Arch_0203 2.4e-111 LPXTG-motif cell wall anchor domain-containing protein; K01081 5'-nucleotidase; Psort location: Cellwall, score: 9.20; Belongs to the 5'-nucleotidase family.
       0.554
KWZ73167.1
Shikimate kinase; KEGG: cfl:Cfla_0786 2.0e-45 thermoresistant glucokinase family carbohydrate kinase K00851; Psort location: Cytoplasmic, score: 7.50.
       0.457
KWZ73168.1
Transporter, gluconate:H+ symporter family; KEGG: eci:UTI89_C3106 8.3e-70 ygbN; inner membrane permease YgbN K03299; Psort location: CytoplasmicMembrane, score: 10.00.
       0.446
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
  
    0.408
Your Current Organism:
Winkia neuii
NCBI taxonomy Id: 33007
Other names: ATCC 51847, Actinomyces neuii, CCUG 32252, CIP 104015, DSM 8576, W. neuii, strain 97/90
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