STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
gabTKEGG: ase:ACPL_4080 3.1e-141 gabT; 4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase K07250; Psort location: Cytoplasmic, score: 9.97; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (441 aa)    
Predicted Functional Partners:
KWZ74973.1
KEGG: aai:AARI_26540 2.9e-138 gabD; succinate-semialdehyde dehydrogenase K00135; Psort location: Cytoplasmic, score: 9.97.
  
 0.953
mmsA
KEGG: pak:HMPREF0675_3499 1.6e-155 mmsA; methylmalonate-semialdehyde dehydrogenase (acylating) K00140; Psort location: Cytoplasmic, score: 9.97.
  
 0.953
KWZ72692.1
KEGG: msm:MSMEG_0582 3.2e-148 succinate-semialdehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+); Psort location: Cytoplasmic, score: 9.64.
 
 0.940
KWZ73255.1
KEGG: xce:Xcel_0693 1.6e-107 phosphate acetyltransferase K13788; Psort location: Cytoplasmic, score: 7.50.
    
 0.859
KWZ72695.1
Purine catabolism regulatory protein-like family protein; Psort location: CytoplasmicMembrane, score: 8.16.
 
   
 0.821
pflB
KEGG: ahe:Arch_0430 0. formate acetyltransferase K00656; Psort location: Cytoplasmic, score: 9.97.
     
 0.805
KWZ72693.1
KEGG: mlu:Mlut_00880 4.5e-133 glutamate dehydrogenase/leucine dehydrogenase K00261; Psort location: Cytoplasmic, score: 9.97; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
  
 0.803
KWZ74956.1
Carboxyl transferase domain protein; KEGG: bln:Blon_2285 1.0e-167 propionyl-CoA carboxylase; Psort location: Cytoplasmic, score: 7.50.
   
 
  0.802
KWZ72696.1
Putative membrane protein; Involved in the import of queuosine (Q) precursors, required for Q precursor salvage; Belongs to the vitamin uptake transporter (VUT/ECF) (TC 2.A.88) family. Q precursor transporter subfamily.
       0.549
tgt
tRNA-guanine transglycosylase; Catalyzes the base-exchange of a guanine (G) residue with the queuine precursor 7-aminomethyl-7-deazaguanine (PreQ1) at position 34 (anticodon wobble position) in tRNAs with GU(N) anticodons (tRNA-Asp, - Asn, -His and -Tyr). Catalysis occurs through a double-displacement mechanism. The nucleophile active site attacks the C1' of nucleotide 34 to detach the guanine base from the RNA, forming a covalent enzyme-RNA intermediate. The proton acceptor active site deprotonates the incoming PreQ1, allowing a nucleophilic attack on the C1' of the ribose to form the [...]
       0.549
Your Current Organism:
Winkia neuii
NCBI taxonomy Id: 33007
Other names: ATCC 51847, Actinomyces neuii, CCUG 32252, CIP 104015, DSM 8576, W. neuii, strain 97/90
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