STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KWZ72423.1Oligoribonuclease; 3'-to-5' exoribonuclease specific for small oligoribonucleotides. (219 aa)    
Predicted Functional Partners:
KWZ75193.1
N-acylglucosamine 2-epimerase; KEGG: ase:ACPL_3867 7.4e-85 yihS-like sugar isomerase.
      0.888
KWZ74644.1
KEGG: ske:Sked_37890 1.4e-163 tRNA adenylyltransferase; K00970 poly(A) polymerase; Psort location: Cytoplasmic, score: 7.50; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
 
   
 0.510
rnj
Hypothetical protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay.
      
 0.499
hrpA
KEGG: ahe:Arch_0127 0. ATP-dependent helicase HrpA; K03578 ATP-dependent helicase HrpA; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.489
whiB
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
  
     0.472
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
  
 0.471
KWZ72424.1
KEGG: apb:SAR116_0400 0.0029 single-stranded DNA-binding protein K03111.
  
   0.460
KWZ72590.1
S1 RNA binding domain protein; KEGG: ahe:Arch_1072 9.9e-209 ribonuclease, Rne/Rng family; K08300 ribonuclease E; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.456
rph
tRNA nucleotidyltransferase; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
   
  
 0.410
Your Current Organism:
Winkia neuii
NCBI taxonomy Id: 33007
Other names: ATCC 51847, Actinomyces neuii, CCUG 32252, CIP 104015, DSM 8576, W. neuii, strain 97/90
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