STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KWZ72473.1Amidohydrolase family protein; KEGG: rop:ROP_65860 7.5e-69 M38 family peptidase; Psort location: Cytoplasmic, score: 7.50. (360 aa)    
Predicted Functional Partners:
ffh
Signal recognition particle protein; Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY. Belongs to the GTP-binding SRP family. SRP54 subfamily.
      0.928
rpsP
Ribosomal protein S16; KEGG: apb:SAR116_1817 2.7e-23 30S ribosomal protein S16 K02959; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bS16 family.
       0.514
KWZ72475.1
KH domain protein; KEGG: ttm:Tthe_1490 0.0080 ribonuclease III K03685; Psort location: Cytoplasmic, score: 7.50; Belongs to the UPF0109 family.
       0.514
KWZ72159.1
Hypothetical protein; KEGG: ana:all2875 0.00068 two-component hybrid sensor and regulator; K02489 two-component system, cell cycle sensor kinase and response regulator.
  
     0.503
KWZ72471.1
KEGG: ahe:Arch_0709 9.7e-76 phosphatidylcholine synthase; K01004 phosphatidylcholine synthase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.482
KWZ74389.1
Amidohydrolase family protein; KEGG: bsb:Bresu_0327 5.5e-13 amidohydrolase; K15358 enamidase; Psort location: Cytoplasmic, score: 7.50.
  
     0.442
rimM
16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
       0.425
trmD
tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
       0.425
Your Current Organism:
Winkia neuii
NCBI taxonomy Id: 33007
Other names: ATCC 51847, Actinomyces neuii, CCUG 32252, CIP 104015, DSM 8576, W. neuii, strain 97/90
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