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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KWZ72576.1Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (455 aa)    
Predicted Functional Partners:
KWZ72577.1
KEGG: xce:Xcel_2279 1.0e-167 ATP-dependent DNA helicase RecG; K03655 ATP-dependent DNA helicase RecG; Psort location: Cytoplasmic, score: 9.97.
       0.773
rsmD
RNA methyltransferase, RsmD family; KEGG: cga:Celgi_1161 2.4e-40 methyltransferase; K08316 16S rRNA (guanine966-N2)-methyltransferase.
       0.773
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
       0.762
KWZ72580.1
Hypothetical protein; KEGG: zga:zobellia_3774 2.6e-08 pelA2; pectate lyase, family PL1; Psort location: Cytoplasmic, score: 7.50.
       0.762
KWZ72581.1
Putative ACR; Psort location: Cytoplasmic, score: 7.50.
       0.762
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
       0.762
KWZ72583.1
DNA-formamidopyrimidine glycosylase; Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases. Has a preference for oxidized purines, such as 7,8-dihydro-8-oxoguanine (8-oxoG). Has AP (apurinic/apyrimidinic) lyase activity and introduces nicks in the DNA strand. Cleaves the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates.
       0.762
KWZ72584.1
Response regulator receiver domain protein; KEGG: npu:Npun_R2420 9.4e-30 LuxR family transcriptional regulator; Psort location: Cytoplasmic, score: 9.97.
       0.746
rpmB
Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
       0.448
Your Current Organism:
Winkia neuii
NCBI taxonomy Id: 33007
Other names: ATCC 51847, Actinomyces neuii, CCUG 32252, CIP 104015, DSM 8576, W. neuii, strain 97/90
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