STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KWZ72135.1TRAM domain protein; KEGG: mcu:HMPREF0573_11780 6.4e-63 TrmA family tRNA (uracil-5-)-methyltransferase; K00599; Psort location: Cytoplasmic, score: 7.50; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (405 aa)    
Predicted Functional Partners:
KWZ72136.1
Hypothetical protein; KEGG: ppo:PPM_1832 2.4e-104 ydaO1; putative O-acetyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.791
KWZ72111.1
Putative ribosomal RNA small subunit methyltransferase B; KEGG: jde:Jden_1312 2.1e-105 Fmu (Sun) domain-containing protein; K03500 16S rRNA (cytosine967-C5)-methyltransferase; Psort location: Cytoplasmic, score: 7.50; Belongs to the class I-like SAM-binding methyltransferase superfamily. RsmB/NOP family.
 
  
 0.600
acnA
Aconitate hydratase 1; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
       0.588
KWZ72137.1
TrkA protein; KEGG: apb:SAR116_0219 3.1e-10 K+ transport systems, NAD-binding component K03499; Psort location: CytoplasmicMembrane, score: 9.96.
       0.564
KWZ72138.1
TrkA protein; KEGG: apb:SAR116_0219 9.3e-12 K+ transport systems, NAD-binding component K03499; Psort location: CytoplasmicMembrane, score: 9.99.
       0.564
pheT
phenylalanine--tRNA ligase, beta subunit; KEGG: mcu:HMPREF0573_10030 5.7e-245 pheT; phenylalanine--tRNA ligase K01890; Psort location: Cytoplasmic, score: 9.97; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
  
 0.540
recN
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA.
  
  
 0.466
der
Ribosome biogenesis GTPase Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the cytidylate kinase family. Type 1 subfamily.
 
    0.462
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.429
KWZ72759.1
tRNA methyltransferase complex GCD14 subunit; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.
   
  
 0.401
Your Current Organism:
Winkia neuii
NCBI taxonomy Id: 33007
Other names: ATCC 51847, Actinomyces neuii, CCUG 32252, CIP 104015, DSM 8576, W. neuii, strain 97/90
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