STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000717335_08237Unannotated protein. (331 aa)    
Predicted Functional Partners:
GCA_000717335_08239
Unannotated protein.
       0.786
GCA_000717335_08238
Unannotated protein.
       0.773
GCA_000717335_02911
Unannotated protein.
 
    0.631
GCA_000717335_00479
Unannotated protein.
 
    0.524
GCA_000717335_06326
Unannotated protein.
 
    0.511
GCA_000717335_09197
Unannotated protein.
 
    0.482
GCA_000717335_04358
Unannotated protein.
 
    0.463
GCA_000717335_09198
Unannotated protein.
 
    0.445
GCA_000717335_09039
Unannotated protein.
 
     0.433
GCA_000717335_06625
Unannotated protein.
 
    0.411
Your Current Organism:
Amycolatopsis jejuensis
NCBI taxonomy Id: 330084
Other names: A. jejuensis, Amycolatopsis jejuensis Lee 2006, JCM 13280, NRRL B-24427, strain N7-3
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.