STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AOG28132.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (95 aa)    
Predicted Functional Partners:
AOG28134.1
Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.731
AOG28131.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.692
AOG28135.1
Pilus assembly protein CpaE; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.680
AOG29317.1
Pilus assembly protein CpaF; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.652
AOG28130.1
Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.599
AOG28133.1
Type II secretion protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.497
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
       0.453
AOG28283.1
Secretion protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.407
Your Current Organism:
Cutibacterium avidum
NCBI taxonomy Id: 33010
Other names: ATCC 25577, Bacteroides avidus, C. avidum, CCUG 36754, CIP 103261, Corynebacterium avidum, DSM 4901, IFO 15671, Mycobacterium avidum, NBRC 15671, NCTC 11864, Propionibacterium avidum, Propionicibacterium avidum
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