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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0008Conserved membrane protein of unknown function, DoxX family; Homologs of previously reported genes of unknown function. (148 aa)    
Predicted Functional Partners:
NIDE0009
Conserved protein of unknown function, NmrA-like; Homologs of previously reported genes of unknown function; 12764138.
 
     0.753
NIDE0010
Conserved protein of unknown function, Pirin-like; Homologs of previously reported genes of unknown function; 11264412, 12426136, 14573596, 9079676; Belongs to the pirin family.
  
  
 0.753
NIDE0011
Putative thiol oxidoreductase, DsbA family, FrnE subfamily; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.691
NIDE0012
Putative Glyoxalase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.666
NIDE0013
Protein of unknown function; No homology to any previously reported sequences.
       0.650
NIDE0014
Putative Dioxygenase, ferredoxin subunit, and Flavodoxin (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.630
NIDE3958
Homologs of previously reported genes of unknown function.
  
  
 0.621
NIDE0016
Putative Glyoxalase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.552
NIDE0015
Homologs of previously reported genes of unknown function.
       0.487
smpB
SsrA-binding protein; Required for rescue of stalled ribosomes mediated by trans- translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene; the 2 termini fold to resemble tRNA(Ala) and it encodes a 'tag peptide', a short internal open reading frame. During trans-translation Ala-aminoacylated tmRNA acts like a tRNA, entering the A-site of stalled ribosomes, displacing the stalled mRNA. The ribosome then switches to [...]
       0.441
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.