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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pchC4-cresol dehydrogenase (hydroxylating), cytochrome c subunit; Function of homologous gene experimentally demonstrated in an other organism; carrier. (113 aa)    
Predicted Functional Partners:
qcrB
Quinol-cytochrome c reductase, fused cytochrome b/c subunit; Function of strongly homologous gene; carrier.
  
 
 0.972
pchF
4-cresol dehydrogenase (hydroxylating), flavoprotein subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
   
   0.752
NIDE0021
Homologs of previously reported genes of unknown function.
       0.737
NIDE0899
Putative Quinol-cytochrome c reductase, cytochrome b subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
  
 
 0.612
NIDE0898
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
  
 
 0.564
aoxA
Arsenite oxidase, small subunit; Function of strongly homologous gene; enzyme.
  
 
 0.564
NIDE3890
Putative Quinol-cytochrome c reductase, iron-sulfur subunit (Rieske iron-sulfur protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
  
 
 0.564
xylB
Aryl-alcohol dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.539
NIDE0019
Protein of unknown function; Doubtful CDS.
       0.531
NIDE0905
Protein of unknown function, putative Cytochrome c; No homology to any previously reported sequences; 3881803.
  
 
 0.528
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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