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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0031Putative Secretion protein HlyD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter. (367 aa)    
Predicted Functional Partners:
ybhF
ABC transport system, fused ATPase components; Function of strongly homologous gene; enzyme.
  
 0.952
NIDE0033
ABC transport system, permease component; Function of strongly homologous gene; transporter.
  
 0.944
yhhJ
ABC transport system, permease component; Function of strongly homologous gene; transporter.
  
 0.937
NIDE0030
Homologs of previously reported genes of unknown function.
       0.773
NIDE3944
Putative ABC-type transport system, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
 0.551
NIDE1685
Putative Outer membrane protein TolC precursor; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
   0.549
NIDE3915
Putative Outer membrane efflux protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
   0.547
macC
ABC transporter, permease component, putative Macrolide export permease protein; Function of strongly homologous gene; transporter.
 
  
 0.543
NIDE3324
Efflux transporter, outer membrane factor lipoprotein; Function of strongly homologous gene; transporter.
  
   0.533
fhlA
Formate hydrogenlyase transcriptional activator; Function of strongly homologous gene; regulator.
       0.532
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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