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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhFABC transport system, fused ATPase components; Function of strongly homologous gene; enzyme. (659 aa)    
Predicted Functional Partners:
NIDE0033
ABC transport system, permease component; Function of strongly homologous gene; transporter.
  
 0.996
yhhJ
ABC transport system, permease component; Function of strongly homologous gene; transporter.
  
 0.994
NIDE0031
Putative Secretion protein HlyD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
 0.952
NIDE3401
Putative ABC-type sugar transport system, ATPase component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the ABC transporter superfamily.
 
     
0.866
NIDE1278
ABC-type transport system, permease component; Function of strongly homologous gene; transporter.
 
 
 0.804
NIDE3434
Putative ABC transport system, permease component; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
 
 0.804
NIDE0030
Homologs of previously reported genes of unknown function.
       0.773
copA
Copper-exporting ATPase; Function of strongly homologous gene; transporter.
  
 
 0.751
NIDE2642
Putative Permease, YjgP/YjgQ family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
   
  
 0.700
NIDE2643
Putative Permease, YjgP/YjgQ family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
   
  
 0.700
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.