Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
yhhJABC transport system, permease component; Function of strongly homologous gene; transporter. (384 aa)    
Predicted Functional Partners:
ybhF
ABC transport system, fused ATPase components; Function of strongly homologous gene; enzyme.
  
 0.994
NIDE0031
Putative Secretion protein HlyD; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
 0.937
NIDE3338
ABC-type transport system, ATP-binding component; Function of strongly homologous gene; transporter.
  
 0.916
drrA
Daunorubicin resistance ABC transporter, ATP-binding protein; Function of strongly homologous gene; transporter.
  
 0.894
NIDE1279
ABC-type transport system, ATPase component; Function of strongly homologous gene; enzyme.
  
 0.887
NIDE3435
ABC-type transport system, ATPase component; Function of strongly homologous gene; enzyme.
  
 0.850
NIDE0033
ABC transport system, permease component; Function of strongly homologous gene; transporter.
 
    
0.816
NIDE0030
Homologs of previously reported genes of unknown function.
       0.695
lptB
ABC-type transport system, ATPase component, putative lipopolysaccharide transport system; Function of strongly homologous gene; transporter.
      0.575
NIDE1161
Membrane protein of unknown function, putative membrane protease; No homology to any previously reported sequences; 8795193.
   
  
 0.564
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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