STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0038Exported protein of unknown function; No homology to any previously reported sequences. (301 aa)    
Predicted Functional Partners:
NIDE0037
Protein of unknown function, putative Anti-sigma factor antagonist; No homology to any previously reported sequences.
       0.689
NIDE0036
Conserved membrane protein of unknown function, DoxX family; Homologs of previously reported genes of unknown function.
       0.576
NIDE0035
Protein of unknown function; No homology to any previously reported sequences.
       0.529
NIDE0039
Putative Antibiotic biosynthesis monooxygenase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.496
NIDE0040
Conserved exported protein of unknown function, periplasmic protein CpxP; Homologs of previously reported genes of unknown function.
       0.438
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.