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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0052Metallo-beta-lactamase superfamily hydrolase; Function of strongly homologous gene; enzyme. (291 aa)    
Predicted Functional Partners:
alkA
DNA-3-methyladenine glycosylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.801
yahD
Conserved protein of unknown function, contains Ankyrin repeats; Homologs of previously reported genes of unknown function; 15063798, 8108379.
   
   0.784
NIDE3565
Putative Ferredoxin-thioredoxin reductase, catalytic subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
     0.615
NIDE0050
Putative Endoribonuclease L-PSP, YjgF-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
    0.547
NIDE1946
Protein of unknown function, putative exoprotein of filamentous haemagglutinin family; No homology to any previously reported sequences; 16339899, 2539596, 7519681, 9724625.
  
     0.542
NIDE4168
Putative Glutathione-regulated potassium-efflux system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter; Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family.
 
  
 0.529
NIDE1742
Putative Multi-domain non-ribosomal peptide synthetase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
 
 0.522
NIDE0048
Putative Methyltransferase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
 
 0.510
NIDE0274
Homologs of previously reported genes of unknown function.
  
     0.495
clpS
ATP-dependent Clp protease adapter protein ClpS; Function of strongly homologous gene; regulator; Belongs to the ClpS family.
  
     0.486
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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