STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yedXTransthyretin-like protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the transthyretin family. 5-hydroxyisourate hydrolase subfamily. (116 aa)    
Predicted Functional Partners:
oxyR
Hydrogen peroxide-inducible genes activator; Function of homologous gene experimentally demonstrated in an other organism; regulator; Belongs to the LysR transcriptional regulatory family.
       0.697
fliG
Flagellar motor switch protein FliG; Function of homologous gene experimentally demonstrated in an other organism; structure.
    
   0.540
flgD
Flagellar hook capping protein FlgD (fragment); Function of homologous gene experimentally demonstrated in an other organism; structure.
    
   0.540
fliM
Flagellar motor switch protein FliM; Function of strongly homologous gene; structure.
    
   0.540
NIDE1143
Oxidoreductase, molybdopterin binding; Function of strongly homologous gene; enzyme.
  
   0.511
NIDE1441
Putative Oxidoreductase, molybdopterin binding; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
   0.509
NIDE0056
Exported protein of unknown function; No homology to any previously reported sequences.
       0.484
NIDE1738
Putative 2-dehydropantoate 2-reductase (modular protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
   0.428
NIDE3884
Putative Sulfite:cytochrome c oxidoreductase, subunit A; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
   
   0.428
ccpA
Cytochrome c551 peroxidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.400
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.