STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccpACytochrome c551 peroxidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (357 aa)    
Predicted Functional Partners:
NIDE1202
Putative Thiol peroxidase (modular protein); Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
      
 0.708
rbr
Rubrerythrin; Function of strongly homologous gene; factor.
   
  
 0.656
trxB
Thioredoxin-disulfide reductase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
      
 0.632
NIDE0056
Exported protein of unknown function; No homology to any previously reported sequences.
       0.620
NIDE3886
Putative Quinol-cytochrome c reductase, cytochrome c subunit; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
  
 0.553
NIDE0058
Homologs of previously reported genes of unknown function.
       0.477
oxyR
Hydrogen peroxide-inducible genes activator; Function of homologous gene experimentally demonstrated in an other organism; regulator; Belongs to the LysR transcriptional regulatory family.
  
  
 0.452
NIDE1420
Protein of unknown function, contains NHL repeats; No homology to any previously reported sequences; 10518528, 15136047, 2169613, 7528812.
  
 
 0.449
NIDE1570
Homologs of previously reported genes of unknown function; 9514722.
  
 
 0.449
NIDE1959
Protein of unknown function, contains YVTN beta-propeller repeat; No homology to any previously reported sequences; 10518528, 11717396, 12377130.
  
 
 0.449
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.