Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0058Homologs of previously reported genes of unknown function. (541 aa)    
Predicted Functional Partners:
NIDE0059
Conserved membrane protein of unknown function, dedA family; Homologs of previously reported genes of unknown function.
       0.709
NIDE3612
Homologs of previously reported genes of unknown function.
  
     0.704
NIDE3133
Homologs of previously reported genes of unknown function.
  
     0.683
NIDE0060
Exported protein of unknown function; No homology to any previously reported sequences.
       0.526
NIDE2584
Conserved exported protein of unknown function DUF1597; Homologs of previously reported genes of unknown function.
  
     0.521
pchF
4-cresol dehydrogenase (hydroxylating), flavoprotein subunit; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
     0.494
NIDE1761
Homologs of previously reported genes of unknown function; 11761326, 12686102, 12686116.
  
     0.484
ccpA
Cytochrome c551 peroxidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.477
NIDE3861
Homologs of previously reported genes of unknown function.
  
    0.456
NIDE3865
Conserved membrane protein of unknown function, contains Thioredoxin-like region; Homologs of previously reported genes of unknown function; 2181145, 2668278, 3152490, 3286320.
  
     0.424
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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