STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0069Conserved protein of unknown funktion (phage-related); Homologs of previously reported genes of unknown function; extrachromosomal origin. (123 aa)    
Predicted Functional Partners:
NIDE0068
Conserved protein of unknown function (phage related); Homologs of previously reported genes of unknown function; extrachromosomal origin.
 
     0.946
NIDE0070
Putative Site-specific recombinase, resolvase family (phage related); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.946
NIDE0071
Conserved protein of unknown function (phage related); Homologs of previously reported genes of unknown function; extrachromosomal origin.
 
     0.946
NIDE0080
Homologs of previously reported genes of unknown function.
 
     0.831
NIDE0082
Homologs of previously reported genes of unknown function.
 
     0.829
NIDE0085
Homologs of previously reported genes of unknown function.
 
     0.828
NIDE0081
Homologs of previously reported genes of unknown function.
 
     0.826
NIDE0089
Putative Polynucleotidyl transferase (phage related); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.797
NIDE0087
Putative DNA primase, P4 family (phage related); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.789
NIDE0090
Homologs of previously reported genes of unknown function.
 
     0.789
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.