STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0071Conserved protein of unknown function (phage related); Homologs of previously reported genes of unknown function; extrachromosomal origin. (150 aa)    
Predicted Functional Partners:
NIDE0068
Conserved protein of unknown function (phage related); Homologs of previously reported genes of unknown function; extrachromosomal origin.
 
     0.947
NIDE0069
Conserved protein of unknown funktion (phage-related); Homologs of previously reported genes of unknown function; extrachromosomal origin.
 
     0.947
NIDE0070
Putative Site-specific recombinase, resolvase family (phage related); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.946
NIDE0087
Putative DNA primase, P4 family (phage related); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.889
NIDE0080
Homologs of previously reported genes of unknown function.
 
     0.832
NIDE0081
Homologs of previously reported genes of unknown function.
 
   
 0.832
NIDE0082
Homologs of previously reported genes of unknown function.
 
     0.832
NIDE0089
Putative Polynucleotidyl transferase (phage related); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.832
NIDE0092
Site-specific DNA-methyltransferase N-4/N-6 (phage related); Function of strongly homologous gene; enzyme; Belongs to the N(4)/N(6)-methyltransferase family.
 
  
 0.832
NIDE0085
Homologs of previously reported genes of unknown function.
 
     0.831
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.