STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0078Homologs of previously reported genes of unknown function. (314 aa)    
Predicted Functional Partners:
NIDE0077
Protein of unknown function; No homology to any previously reported sequences.
       0.802
NIDE0080
Homologs of previously reported genes of unknown function.
       0.564
NIDE0081
Homologs of previously reported genes of unknown function.
       0.564
NIDE0082
Homologs of previously reported genes of unknown function.
       0.564
NIDE0085
Homologs of previously reported genes of unknown function.
       0.553
NIDE0087
Putative DNA primase, P4 family (phage related); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
       0.547
NIDE0076
Conserved protein of unknown function, contains Peptidase M, zinc-binding site domain; Homologs of previously reported genes of unknown function.
       0.546
NIDE0079
Homologs of previously reported genes of unknown function.
       0.545
NIDE0075
Putative Transcriptional regulator, Lambda repressor-like; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
       0.528
NIDE0086
Homologs of previously reported genes of unknown function.
       0.524
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.