STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0082Homologs of previously reported genes of unknown function. (214 aa)    
Predicted Functional Partners:
NIDE0081
Homologs of previously reported genes of unknown function.
     0.984
NIDE0087
Putative DNA primase, P4 family (phage related); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.954
NIDE0080
Homologs of previously reported genes of unknown function.
 
     0.953
NIDE0085
Homologs of previously reported genes of unknown function.
 
     0.950
NIDE0089
Putative Polynucleotidyl transferase (phage related); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.888
NIDE0090
Homologs of previously reported genes of unknown function.
 
     0.858
NIDE0068
Conserved protein of unknown function (phage related); Homologs of previously reported genes of unknown function; extrachromosomal origin.
 
     0.831
NIDE0071
Conserved protein of unknown function (phage related); Homologs of previously reported genes of unknown function; extrachromosomal origin.
 
     0.831
NIDE0069
Conserved protein of unknown funktion (phage-related); Homologs of previously reported genes of unknown function; extrachromosomal origin.
 
     0.829
NIDE0070
Putative Site-specific recombinase, resolvase family (phage related); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
     0.824
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.