Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0083Homologs of previously reported genes of unknown function. (284 aa)    
Predicted Functional Partners:
NIDE0087
Putative DNA primase, P4 family (phage related); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
  
 0.778
NIDE0084
Homologs of previously reported genes of unknown function.
       0.773
NIDE0085
Homologs of previously reported genes of unknown function.
       0.773
NIDE0086
Homologs of previously reported genes of unknown function.
       0.773
NIDE0080
Homologs of previously reported genes of unknown function.
       0.757
NIDE0081
Homologs of previously reported genes of unknown function.
       0.757
NIDE0082
Homologs of previously reported genes of unknown function.
       0.757
NIDE0079
Homologs of previously reported genes of unknown function.
  
  
 0.743
NIDE0077
Protein of unknown function; No homology to any previously reported sequences.
       0.538
NIDE0078
Homologs of previously reported genes of unknown function.
       0.521
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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