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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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[Homology]
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NIDE0089Putative Polynucleotidyl transferase (phage related); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. (154 aa)    
Predicted Functional Partners:
ruvA
Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.
  
 
 0.964
NIDE0093
Site-specific DNA-methyltransferase N-4/N-6 (phage related); Function of strongly homologous gene; enzyme; Belongs to the N(4)/N(6)-methyltransferase family.
     0.936
NIDE0087
Putative DNA primase, P4 family (phage related); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
  
 0.916
NIDE0085
Homologs of previously reported genes of unknown function.
 
     0.891
NIDE0082
Homologs of previously reported genes of unknown function.
 
     0.888
NIDE0080
Homologs of previously reported genes of unknown function.
 
     0.887
NIDE0081
Homologs of previously reported genes of unknown function.
 
     0.886
NIDE0090
Homologs of previously reported genes of unknown function.
 
     0.886
NIDE0092
Site-specific DNA-methyltransferase N-4/N-6 (phage related); Function of strongly homologous gene; enzyme; Belongs to the N(4)/N(6)-methyltransferase family.
     0.841
ruvB
Holliday junction ATP-dependent DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
  
 
 0.822
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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