Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0098Protein of unknown function; No homology to any previously reported sequences. (68 aa)    
Predicted Functional Partners:
NIDE0097
Homologs of previously reported genes of unknown function.
  
    0.600
NIDE0099
Conserved protein of unknown function (phage related); Homologs of previously reported genes of unknown function; extrachromosomal origin.
       0.596
NIDE0100
Phage terminase, large subunit; Function of strongly homologous gene; extrachromosomal origin.
       0.591
NIDE0103
Homologs of previously reported genes of unknown function.
       0.562
NIDE0104
Phage portal protein, lambda family; Function of strongly homologous gene; extrachromosomal origin.
       0.560
NIDE0102
Homologs of previously reported genes of unknown function.
       0.557
NIDE0101
Homologs of previously reported genes of unknown function.
       0.549
NIDE0107
Conserved protein of unknown function (phage related); Homologs of previously reported genes of unknown function.
       0.538
NIDE0108
Homologs of previously reported genes of unknown function.
       0.537
NIDE0109
Homologs of previously reported genes of unknown function.
       0.524
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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