STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0100Phage terminase, large subunit; Function of strongly homologous gene; extrachromosomal origin. (652 aa)    
Predicted Functional Partners:
NIDE0106
Conserved protein of unknown function (phage related); Homologs of previously reported genes of unknown function.
 
  
 0.981
NIDE0099
Conserved protein of unknown function (phage related); Homologs of previously reported genes of unknown function; extrachromosomal origin.
 
     0.952
NIDE0104
Phage portal protein, lambda family; Function of strongly homologous gene; extrachromosomal origin.
  
 0.952
NIDE0101
Homologs of previously reported genes of unknown function.
  
  
 0.939
NIDE0107
Conserved protein of unknown function (phage related); Homologs of previously reported genes of unknown function.
 
     0.938
NIDE0093
Site-specific DNA-methyltransferase N-4/N-6 (phage related); Function of strongly homologous gene; enzyme; Belongs to the N(4)/N(6)-methyltransferase family.
  
 0.918
NIDE0105
Putative Phage minor capsid protein C; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
 
    0.905
NIDE0097
Homologs of previously reported genes of unknown function.
 
    0.874
NIDE0121
Homologs of previously reported genes of unknown function.
 
  
 0.822
NIDE0092
Site-specific DNA-methyltransferase N-4/N-6 (phage related); Function of strongly homologous gene; enzyme; Belongs to the N(4)/N(6)-methyltransferase family.
  
 0.819
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.