Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0101Homologs of previously reported genes of unknown function. (163 aa)    
Predicted Functional Partners:
NIDE0106
Conserved protein of unknown function (phage related); Homologs of previously reported genes of unknown function.
  
  
 0.953
NIDE0100
Phage terminase, large subunit; Function of strongly homologous gene; extrachromosomal origin.
  
  
 0.945
NIDE2234
Conserved protein of unknown function, putative Baseplate assembly protein W (GpW); Homologs of previously reported genes of unknown function; 3520236.
  
  
 0.855
NIDE2231
Homologs of previously reported genes of unknown function.
  
  
 0.829
NIDE0104
Phage portal protein, lambda family; Function of strongly homologous gene; extrachromosomal origin.
  
  
 0.816
NIDE2219
Putative Phage tail sheath protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
  
  
 0.815
NIDE0102
Homologs of previously reported genes of unknown function.
       0.802
NIDE0103
Homologs of previously reported genes of unknown function.
       0.802
NIDE0107
Conserved protein of unknown function (phage related); Homologs of previously reported genes of unknown function.
       0.788
NIDE0108
Homologs of previously reported genes of unknown function.
       0.785
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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