STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
NIDE0106Conserved protein of unknown function (phage related); Homologs of previously reported genes of unknown function. (125 aa)    
Predicted Functional Partners:
NIDE0100
Phage terminase, large subunit; Function of strongly homologous gene; extrachromosomal origin.
 
  
 0.983
NIDE2234
Conserved protein of unknown function, putative Baseplate assembly protein W (GpW); Homologs of previously reported genes of unknown function; 3520236.
  
 
 0.962
NIDE0101
Homologs of previously reported genes of unknown function.
  
  
 0.953
NIDE0104
Phage portal protein, lambda family; Function of strongly homologous gene; extrachromosomal origin.
 
  
 0.952
NIDE0107
Conserved protein of unknown function (phage related); Homologs of previously reported genes of unknown function.
 
     0.950
NIDE2231
Homologs of previously reported genes of unknown function.
  
 
 0.946
NIDE0105
Putative Phage minor capsid protein C; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
 
  
 0.945
NIDE0099
Conserved protein of unknown function (phage related); Homologs of previously reported genes of unknown function; extrachromosomal origin.
 
     0.935
NIDE0114
Putative Phage tail length tape measure protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; extrachromosomal origin.
 
   0.909
NIDE2235
Homologs of previously reported genes of unknown function.
  
 
 0.886
Your Current Organism:
Nitrospira defluvii
NCBI taxonomy Id: 330214
Other names: Candidatus Nitrospira defluvii, LMG 27402, LMG:27402, N. defluvii, NCIMB 14950, strain A17
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.